Easy install

  • Required packages in python: numpy, matplotlib, pysam

    • we suggest using Anaconda distribute, which includes most packages (except pysam here), and provides you a user specific environment, i.e., all your python packages go to a single folder. Thus, you don’t need the root to install packages.
    • you could install pysam by pypi in terminal, or download and install as diceseq.
  • You can install DICEseq simply via pypi in terminal (suggested), or upgrade by add --upgrade as follows:

    pip install diceseq
    pip install --upgrade --no-deps diceseq

Source code